Plug Biodock into the tools you already run

Biodock Scripts — bring your own Python, run it on your results

Upload a Python script, and Biodock runs it directly against your analysis job — your images and results already available in the script's filesystem, no manual download or upload step.

pythonimage_path = input_items[0]["image_path"]
json_file_path = input_items[0]["geojson_path"]
# your custom logic, then write results to output_dir

Anything written to the output directory — a CSV, a plot, a custom report — becomes downloadable automatically, alongside console output and any errors for easy debugging. If a standard metric doesn't cover what you need, script it.

API — upload, analyze, and retrieve results programmatically

Upload images, run analysis, and download results through simple web requests — every action is tracked the same way in your dashboard as if you'd done it manually, so nothing feels hidden or disconnected from the rest of the app.

Teams use the API to:

• Automatically analyze images as they're acquired — say, three times a day off a cell culture imager — and push results to their own cloud storage
• Sync data into Biodock from multiple imaging instruments
• Run continuous quality control on samples and get alerted the moment something fails
• Submit files for analysis directly from an internal dashboard or LIMS

Claude integration — ask Biodock questions in plain language

Already using Biodock's AI agent to ask about a specific result? Connect Claude for the same kind of plain-language access across your whole account — jobs, files, and results, from a conversation instead of the app.

Claude starts with read-only access — anything that changes your account, like starting a new analysis, requires separate approval first. Deletion always stays a manual, in-app action.

Proscia integration — sync your Cocentriq repository automatically

Connect a Cocentriq repository to Biodock once, and new images sync automatically — no manual export and re-upload every time your repository updates. Biodock checks for new files every 30 minutes and imports them directly into your workspace.

Cloud infrastructure

Connect Amazon S3 or Google Cloud directly, and Biodock can read images straight from your bucket. Useful if your lab already has an automated pipeline dropping files into cloud storage from instruments or other systems — Biodock becomes another consumer of that same data, not a separate copy you have to maintain.

Amazon S3Google Cloud

File storage and sync

Connect Google Drive, Dropbox, Box, or OneDrive, the everyday drives your team already shares files through. If your images and datasets are already organized there, there's no need to reorganize or duplicate them just to bring them into Biodock.

Google DriveDropboxBoxOneDrive